Comparison diagram of prokaryotic and eukaryotic cells, showing structural differences such as nucleus and organelles.
Comparison diagram of prokaryotic and eukaryotic cells, showing structural differences such as nucleus and organelles.

Prokaryotes vs Eukaryotes: Key Differences and Similarities

Every living organism on Earth is categorized into one of two groups: prokaryotes or eukaryotes. This classification hinges on their fundamental cellular structure. Prokaryotes are typically unicellular organisms distinguished by the absence of a nucleus and other membrane-bound organelles. Generally smaller and simpler in structure, prokaryotes encompass bacteria and archaea. Eukaryotes, conversely, are often multicellular, boasting a nucleus and membrane-bound organelles that intricately organize cellular functions. This group includes animals, plants, fungi, algae, and protozoans.

This article delves into a detailed comparison of prokaryotes and eukaryotes, highlighting their similarities and, more importantly, the key differences that define them.

Contents

Prokaryotes and Eukaryotes: A Detailed Comparison

Shared Characteristics of Prokaryotes and Eukaryotes

Deciphering the Differences: Prokaryotes vs Eukaryotes

  • Transcription and Translation: A Contrast

Prokaryotic Cells: Defining Features

  • Hallmarks of Prokaryotic Cell Structure
  • Examples of Prokaryotes in Nature
  • The Nucleus Question in Prokaryotes
  • Mitochondria in Prokaryotes: Absence Explained

Eukaryotic Cells: Defining Features

  • Hallmarks of Eukaryotic Cell Structure
  • Diverse Examples of Eukaryotes

Prokaryotes and Eukaryotes: A Detailed Comparison {#C1}

Prokaryotes represent the earliest forms of life, with scientific consensus suggesting eukaryotes evolved from prokaryotic ancestors approximately 2.7 billion years ago.1 The prevailing theory regarding eukaryotic origins posits that endosymbiosis, a process involving a symbiotic relationship and subsequent merger of two prokaryotic cells, played a crucial role.2 These endosymbiotic events are believed to have given rise to membrane-bound organelles, notably mitochondria. The emergence of mitochondria provided eukaryotic ancestors with the necessary energy to evolve into the complex eukaryotic cells observed today.

Figure 1: Visual comparison highlighting the common and distinct structural features of prokaryotic and eukaryotic cells. Credit: Technology Networks.

However, groundbreaking research from the University of Jena, published in mBio, has challenged conventional understanding by revealing prokaryotic bacteria capable of cellular engulfment, or “eating” other cells.3 This discovery contradicts previous assumptions that endocytosis, a process of internalizing substances through vesicle formation, was exclusive to eukaryotes. These findings necessitate a re-evaluation of existing theories concerning eukaryotic origins, suggesting a potentially more complex evolutionary pathway than previously conceived.

The most fundamental distinction between prokaryotes and eukaryotes lies in the presence or absence of a membrane-bound nucleus. Eukaryotic cells possess a nucleus, serving as the repository for their genetic material. In contrast, prokaryotic DNA is centralized in a nucleoid region, yet lacks enclosure within a nuclear membrane.

Beyond the nucleus, eukaryotes are characterized by a multitude of membrane-bound organelles, a feature entirely absent in prokaryotes. Another significant differentiator is DNA structure and location.4 Eukaryotic DNA is organized into multiple linear, double-stranded molecules housed within the nucleus. Prokaryotic DNA, conversely, is typically a singular, circular, double-stranded molecule situated in the cytoplasm. It is important to note, however, that exceptions exist, with linear plasmids and chromosomes identified in certain prokaryotic species.5

Shared Characteristics of Prokaryotes and Eukaryotes {#C2}

Despite their significant differences, prokaryotic and eukaryotic cells share several essential features, underscoring their common ancestry and fundamental requirements for life (Figure 1):

  1. Deoxyribonucleic Acid (DNA): Both cell types utilize DNA as their genetic material, carrying the instructions for cellular function and reproduction. This DNA is organized into genes that dictate the synthesis of proteins and regulate cellular processes.
  2. Plasma Membrane: A plasma membrane, also known as the cell membrane, is a universal feature, acting as a selective barrier that separates the internal cellular environment from the external surroundings. This membrane regulates the passage of nutrients, waste products, and other molecules.
  3. Cytoplasm: The cytoplasm is the gel-like substance filling the cell, encompassing all cellular components except the nucleus in eukaryotes. It provides a medium for biochemical reactions and houses organelles.
  4. Ribosomes: Ribosomes are the molecular machines responsible for protein synthesis. Present in both prokaryotes and eukaryotes, ribosomes translate genetic information encoded in messenger RNA (mRNA) into proteins, essential for all cellular functions.

Deciphering the Differences: Prokaryotes vs Eukaryotes {#C3}

The divergence between prokaryotes and eukaryotes is marked by several key distinctions, primarily structural. These differences are summarized in Table 1, providing a clear comparative overview.

Table 1: Comparative Table: Key Differences Between Prokaryotes and Eukaryotes.

Feature Prokaryote Eukaryote
Nucleus Absent Present
Membrane-bound Organelles Absent Present
Cell Structure Predominantly Unicellular Predominantly Multicellular; Unicellular forms exist
Cell Size Typically smaller (0.1–5 μm), with the notable exception of a recently discovered centimeter-long bacterium in a mangrove swamp, challenging typical size constraints. Larger (10–100 μm)
Cell Complexity Simpler organization More complex, with intricate internal organization
DNA Form Predominantly circular, although linear plasmids and chromosomes have been observed in certain prokaryotes, indicating greater diversity than initially thought. Linear, organized into chromosomes
Examples Bacteria, Archaea Animals, Plants, Fungi, Protists

Transcription and Translation: A Contrast

Transcription and translation, the fundamental processes of gene expression, exhibit notable differences between prokaryotes and eukaryotes.

In prokaryotic cells, transcription and translation are coupled processes. Translation commences even as mRNA synthesis is ongoing.6 This simultaneous coupling is facilitated by the absence of a nucleus, allowing ribosomes direct access to mRNA transcripts.

In eukaryotic cells, transcription and translation are spatially and temporally separated. Transcription occurs within the nucleus, where DNA is transcribed into precursor mRNA. This mRNA undergoes processing before being exported from the nucleus to the cytoplasm, where translation by ribosomes takes place. This separation allows for more complex regulatory mechanisms in gene expression in eukaryotes.

Prokaryotic Cells: Defining Features {#C4}

Prokaryotes, encompassing Bacteria and Archaea domains, are unicellular organisms devoid of membrane-bound organelles. Characterized by their small size and relatively simple structure, prokaryotic cells typically range from 0.1 to 5 μm in diameter.7

Figure 2: Schematic diagram illustrating the fundamental structural components of a prokaryotic cell. Credit: Technology Networks.

Despite lacking membrane-bound organelles, prokaryotic cells exhibit distinct internal organization. DNA is concentrated within the nucleoid region (Figure 2), a non-membrane bound area. Within prokaryotic cytoplasm, proteins, DNA, and metabolites coexist. Primitive organelles, found in some bacteria, act as micro-compartments, providing a degree of spatial organization.8

Hallmarks of Prokaryotic Cell Structure

A typical prokaryotic bacterial cell showcases the following key features (Figure 2):

  • Nucleoid: The central region housing the cell’s DNA, although not enclosed by a membrane.
  • Ribosomes: Sites of protein synthesis, dispersed throughout the cytoplasm.
  • Cell Wall: An external layer providing structural integrity and protection. In most bacteria, this rigid wall is composed of peptidoglycans, a polymer of carbohydrates and proteins.
  • Cell Membrane (Plasma Membrane): An essential barrier separating the cell’s interior from the external environment, present in all prokaryotes.
  • Capsule: A carbohydrate layer enveloping the cell wall in some bacteria, aiding in surface attachment and protection against adverse conditions.
  • Pili (Fimbriae): Rod-shaped appendages involved in diverse functions, including attachment to surfaces and DNA transfer.
  • Flagella: Tail-like structures facilitating cellular motility in many prokaryotes.

Examples of Prokaryotes in Nature

Bacteria and archaea constitute the two primary domains of prokaryotic life, inhabiting a vast array of environments from soil and water to extreme habitats.

The Nucleus Question in Prokaryotes

Prokaryotes definitively lack a nucleus. Their DNA resides in the nucleoid region, centrally located but not membrane-enclosed. Prokaryotic DNA typically exists as a single circular chromosome. Furthermore, they lack other membrane-bound organelles like the endoplasmic reticulum.

Mitochondria in Prokaryotes: Absence Explained

Prokaryotes do not possess mitochondria. Mitochondria, the energy-generating organelles, are exclusive to eukaryotic cells. This absence extends to other membrane-bound organelles such as the Golgi apparatus, characteristic of eukaryotes.

Eukaryotic Cells: Defining Features {#C5}

Eukaryotes are organisms characterized by cells containing a nucleus and other organelles enclosed within plasma membranes (Figure 3). Organelles are specialized internal structures performing distinct cellular functions, such as energy production and protein synthesis.

Figure 3: Diagram illustrating the key structural components of a eukaryotic cell, highlighting membrane-bound organelles. Credit: Technology Networks.

Eukaryotic cells are generally larger (10–100 μm) and exhibit greater complexity compared to prokaryotes. While most eukaryotes are multicellular, unicellular eukaryotic organisms also exist.9

Hallmarks of Eukaryotic Cell Structure

Eukaryotic cells are characterized by a compartmentalized structure, with each membrane-bound organelle undertaking specific roles:

  • Nucleus: The control center, housing the cell’s genetic information in the form of chromatin.
  • Nucleolus: A substructure within the nucleus, responsible for ribosomal RNA (rRNA) production.
  • Plasma Membrane: The outer boundary, a phospholipid bilayer enclosing the cell and its internal components.
  • Cytoskeleton: A network of protein fibers providing structural support, shape, and facilitating organelle positioning.
  • Cell Wall: Present in plant cells and some other eukaryotes (but not animal cells), offering rigid structural support and protection.
  • Ribosomes: Sites of protein synthesis, found free in the cytoplasm and bound to the endoplasmic reticulum.
  • Mitochondria: The “powerhouses” of the cell, responsible for generating energy through cellular respiration.
  • Cytoplasmic Space: The region between the nuclear envelope and plasma membrane.
  • Cytoplasm: The total internal volume excluding the nucleus, encompassing the cytosol and all organelles.
  • Cytosol: The gel-like fluid component of the cytoplasm, excluding the contents of membrane-bound organelles.
  • Endoplasmic Reticulum (ER): A network involved in protein maturation, lipid synthesis, and transport.
  • Vesicles and Vacuoles: Membrane-bound sacs involved in transport, storage, and waste management.

Other common organelles in many eukaryotes include the Golgi apparatus (protein processing and trafficking), chloroplasts (photosynthesis in plant cells and algae), and lysosomes (cellular digestion).

Diverse Examples of Eukaryotes

The eukaryotic domain encompasses a vast diversity of life, including animals, plants, fungi, algae, and protozoans, showcasing the evolutionary success and adaptability of this cell type.

References

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  2. Archibald JM. Endosymbiosis and eukaryotic cell evolution. Curr Biol. 2015;25(19):R911-R921. doi: 10.1016/j.cub.2015.07.055
  3. Wurzbacher Carmen E., Hammer Jonathan, Haufschild Tom, Wiegand Sandra, Kallscheuer Nicolai, Jogler Christian. “Candidatus Uabimicrobium helgolandensis”—a planctomycetal bacterium with phagocytosis-like prey cell engulfment, surface-dependent motility, and cell division. mBio. 2024;15(10):e02044-24. doi: 10.1128/mbio.02044-24
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  7. Secaira-Morocho H, Chede A, Gonzalez-de-Salceda L, Garcia-Pichel F, Zhu Q. An evolutionary optimum amid moderate heritability in prokaryotic cell size. Cell Rep. 2024;43(6):114268. doi: 10.1016/j.celrep.2024.114268
  8. Cole LA. Biology of Life. Academic Press; 2016:93-99. https://www.sciencedirect.com/science/article/abs/pii/B9780128096857000137. Accessed January 29, 2025.
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